Opening the paper…

Algorithmic Thinking in Bioinformatics, End Term

May 2024 term, 1 Sept 2024, Set QDB1

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Question 1

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A.
TRUE
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Figure from the original question paper Shown below is the motif detector matrix of a Transition Factor(TF) learnt by DeepBind. | A | 0 | 1 | 1 | 3 | |---|---|---|---|---| | C | 1 | 3 | 5 | 0 | | T | 2 | 0 | 1 | 1 | | G | 5 | 1 | 0 | 1 | Suppose this motif is scanned by DeepBind along the given sequence `CAGTTCTACGCT`. What is the dimension of the one hot encoded sequence after padding? Figure from the original question paper